You can now download Cyberintegrator 2.0 alpha 5. One of the new features in this version of the Cyberintegrator is the inclusion of a new executor, Human executor. This executor can be used to have the user perform an action, for example ask the user to take a picture and upload the image, or ask the user to run a tool that can not be encapsulated as a tool in the Cyberintegrator.

As of this version the Cyberintegrator is build using eclipse 3.4. This allowed us to add status messages at the bottom of the Cyberintegrator. This will show you who you are logged in as, as well as the number of jobs that are queued for the local engine and are running.

Following is a list of all issues resolved in alpha 5.

Bug

• [CBI-119] - should allow for null parameter
• [CBI-121] - import of zip file as data should trigger import data with metadata first.
• [CBI-191] - need intro screen to clarify some concepts
• [CBI-202] - TAG and "Open in new window" are always disabled in context view
• [CBI-216] - Java Wizard Null error
• [CBI-220] - Exception
• [CBI-222] - When selecting input/outputs in java tool wizard, the wizard will not allow you to remove one by itself.
• [CBI-224] - Adding *.jars to Cyberintegrator Tools
• [CBI-226] - Unable to run CyberintegratorTool with Parameters
• [CBI-229] - Editing Command Line Tools
• [CBI-230] - Cyberintegrator’s java executor does not know how to differentiate between text/plain and application/xml mimetype.
• [CBI-232] - UUID Error on Workflow Import
• [CBI-233] - UUID Error on Tool Import
• [CBI-234] - Unable to edit or remove parameters in Matlab tool creation
• [CBI-240] - add option to wait for tool
• [CBI-241] - Tupelo Browser is non-functional
• [CBI-242] - Selecting "Tupelo View" is not easily accessible from the workspace.
• [CBI-245] - PermGen out of memory when creating a Cyberintegrator tool
• [CBI-246] - When importing a command line tool, Cyberintegrator resets the paths in any and all outputs set.
• [CBI-248] - Increase Default Java Heap Size
• [CBI-249] - Unhandled event loop exception thrown when running Cyberintegrator tool
• [CBI-250] - Import and creation of tools unavailable on OS X (jaxb issue)
• [CBI-252] - Unable to Execute C.I. Tools
• [CBI-254] - Command Line Tool error
• [CBI-255] - Unhandled event loop exception thrown when running Command Line tool in build #447
• [CBI-256] - Showing the version numbers of tools in the export wizard

Improvement

• [CBI-99] - Improve java executor wizard
• [CBI-177] - adding attributes only allows adding predicate
• [CBI-189] - demo context workflow is anonymous
• [CBI-227] - Tupelo interface for tools
• [CBI-237] - call script instead of executing each line
• [CBI-238] - Add application/xml
• [CBI-251] - if local context don’t stage data

New Feature

• [CBI-82] - engine should show state of step, number of steps in queue in status line
• [CBI-140] - Ability to remove tag
• [CBI-208] - Runtime reporter / timer
• [CBI-228] - steps should have abort state
• [CBI-253] - Rename Data

Task

• [CBI-8] - Human Executors

You can now download Cyberintegrator 2.0 alpha 4. The main new feature in this version of the Cyberintegrator is the inclusion of a new executor, Cyberintegrator executor. This executor will eventually replace the java executor. Another new feature that was added was the capability to create parameters for the Matlab executor. The parameter is set as a variable before the matlab code is executed.

Following is a list of all issues resolved in alpha 4.

Bug

• [CBI-125] - link from step to tool should use id and refid, not matching name
• [CBI-184] - matlab tool wizard does not work correctly with file
• [CBI-206] - Unable to edit tools once created
• [CBI-209] - Memory dumps when attempting to open large data sets
• [CBI-211] - Cannot re-run tools without RDF getting screwed up
• [CBI-215] - Editing Java Tools removes previous scripts
• [CBI-218] - Cannot add options to External tool flags
• [CBI-219] - Cyberintegrator Tools Input/Output list
• [CBI-221] - CLONE -Cyberintegrator Tools Input/Output list

Comment

• [CBI-213] - Symbolically linking matlab working directory

Improvement

• [CBI-107] - Ability to set parameters on matlab executor

New Feature

• [CBI-198] - group data by step

Sub-task

• [CBI-199] - parameters should use refid
• [CBI-200] - inputs should use refid
• [CBI-201] - outputs should use refid

You can now download Cyberintegrator 2.0 alpha 3. The major addition in this release is the ability to edit tools. You can now right click on a tool and edit the tool definition. Cyberintegrator should now work on a Apple MAC (tested on OSx 10.5). One other major change is the switch of CET namespace used in Cyberintegrtor from tag:cet.ncsa.uiuc.edu,2007: to http://cet.ncsa.uiuc.edu/2007. The Cyberintegrator should take of this switch automatically.

Following is a list of all issues resolved in alpha 3.

Release Notes - Cyberintegrator - Version 2.0.alpha3

Bug

• [CBI-72] - Steps are not re-executed if system crashes (or in case of remote executor reconnected)
• [CBI-90] - drag and drop to same view, duplicates item
• [CBI-123] - export workflow from right click does not work in context view
• [CBI-175] - when exporting tools using drag and drop, use name tool instead of random name
• [CBI-176] - when exporting multiple data/drag data/tool make sure not to overwrite
• [CBI-181] - Cannot add WINWORD.exe to the list of tools (neither by dragging nor via File/Import/XML tool). There is no option for adding an executable as a tool
• [CBI-182] - When a data file is inserted that cannot be recognized then an error message will always pop for every data file double clicked (in known and unknown file format)
• [CBI-183] - Matlab execution fails because of linking issues on linux
• [CBI-190] - data is missing in demo context
• [CBI-194] - switch from tag to http for CET vocabulary
• [CBI-195] - HAS_PREVIOUS_VERSION should point to previous version of tool, not previous version number

Improvement

• [CBI-131] - Group data by created on (date)
• [CBI-132] - Allow grouping by creator

New Feature

• [CBI-39] - Edit existing tool
• [CBI-96] - allow to change mime type
• [CBI-179] - temp space

Sub-task

• [CBI-185] - Ability to edit matlab tools
• [CBI-186] - Ability to edit external tools
• [CBI-187] - Ability to edit java tools
• [CBI-188] - Show latest version of the tool in the workflow/context
• [CBI-193] - when editing tools make sure contributor is added

Cyberintegrator 2.0 alpha 2 has been released. We have fixed many bugs in Cyberintegrator and have released a new version. You can find this at http://isda.ncsa.uiuc.edu/download/. Following is a list of issues resolved in this release:

Release Notes - Cyberintegrator - Version 2.0.alpha2

Bug

• [CBI-83] - Add attribute does not work
• [CBI-138] - All files *.* is not all files under linux
• [CBI-150] - Remove visualize button in workflow view
• [CBI-153] - Add way to add parameters to Java Executor wizard
• [CBI-154] - Export Tool/Data/Workflow currently need .zip extension to work.
• [CBI-156] - Import tool not working
• [CBI-157] - Export tool not exporting type of parameter
• [CBI-158] - Import tool does not import implementation
• [CBI-160] - Files embedded with the external executor tools loose execution permission when zipped and added to the context
• [CBI-161] - Matlab wizard does not come up
• [CBI-162] - Step info shows parameters values for the tool associated with the step and not the step itself
• [CBI-163] - preferences for logging does not reflect global setting
• [CBI-164] - looping logging
• [CBI-168] - path for derby is strange "."
• [CBI-169] - clicking OK/Apply in preferences destroys local context
• [CBI-172] - InfoView does not delete old content if new workflow is started, context is changed, etc.
• [CBI-173] - Hitting cancel when importing a data set
• [CBI-178] - Clicking OK in the preferences drops the current context and creates a new one

Comment

• [CBI-165] - running step with local engine

Improvement

• [CBI-115] - when tif image is exported its name is changed to .tif.unknown. it is not clear why.
• [CBI-134] - Simpler interface to list and find a mime type
• [CBI-135] - Change name of new tools wizards to new tools "Matlab tool" "Command line tool"…
• [CBI-136] - Change from "Help" to "Description" in new tool wizards
• [CBI-137] - List of mime types in tool wizard should be the full list
• [CBI-139] - Default to Group by Name in Data view
• [CBI-155] - Add right click menu entry to export data/tools/workflows crom context view
• [CBI-166] - ship example context
• [CBI-167] - Uncheck show user interactions by default
• [CBI-171] - csv files are missing mime type
• [CBI-180] - cyberintegrator is sluggish with local context

New Feature

• [CBI-55] - export tool using drag and drop